Package: ExpGenetic
Type: Package
Title: Non-Additive Expression Analysis of Hybrid Offspring
Version: 0.1.0
Authors@R: person("Yuqing", "Wu", , "wuyuqing0104@163.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6333-0926"))
Description: Three functional modules, including genetic features,
        differential expression analysis and non-additive expression
        analysis were integrated into the package. And the package is
        suitable for RNA-seq and small RNA sequencing data. Besides,
        two methods of non-additive expression analysis were provided.
        One is the calculation of the additive (a) and dominant (d),
        the other is the evaluation of expression level dominance by
        comparing the total expression of the gene in hybrid offspring
        with the expression level in parents. For non-additive
        expression analysis of RNA-seq data, it is only applicable to
        hybrid offspring (including two sub-genomes) species for the
        time being.
License: AGPL (>= 3)
Encoding: UTF-8
LazyData: true
Imports: DESeq2 (>= 1.34.0), futile.logger (>= 1.4.3), ggplot2 (>=
        3.3.6), ggsci (>= 2.9), plyr (>= 1.8.7), VennDiagram (>= 1.7.3)
Depends: R (>= 2.10)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
Config/pak/sysreqs: zlib1g-dev
Repository: https://w123yu.r-universe.dev
Date/Publication: 2022-10-17 12:42:29 UTC
RemoteUrl: https://github.com/w123yu/expgenetic
RemoteRef: HEAD
RemoteSha: dff9aefc0aeb2500a43b9d125da2ad96d461f998
NeedsCompilation: no
Packaged: 2026-10-01 09:12:33 UTC; root
Author: Yuqing Wu [aut, cre] (ORCID: <https://orcid.org/0000-0002-6333-0926>)
Maintainer: Yuqing Wu <wuyuqing0104@163.com>