Package: sRNAGenetic 0.1.0
sRNAGenetic: Analysis of sRNA Expression Changes During Plant Polyploidization
The most important function of the R package sRNAGenetic is the genetic effects analysis of miRNA after plant polyploidization via two methods, and at the same time, it provides various forms of graph related to data characteristics and expression analysis. In terms of two classification methods, one is the calculation of the additive (a) and dominant (d), the other is the evaluation of ELD (expression level domainance) by comparing the total expression of the miRNA in allotetraploids with the expression level in the parent species.
Authors:
sRNAGenetic_0.1.0.tar.gz
sRNAGenetic_0.1.0.zip(r-4.5)sRNAGenetic_0.1.0.zip(r-4.4)sRNAGenetic_0.1.0.zip(r-4.3)
sRNAGenetic_0.1.0.tgz(r-4.4-any)sRNAGenetic_0.1.0.tgz(r-4.3-any)
sRNAGenetic_0.1.0.tar.gz(r-4.5-noble)sRNAGenetic_0.1.0.tar.gz(r-4.4-noble)
sRNAGenetic_0.1.0.tgz(r-4.4-emscripten)sRNAGenetic_0.1.0.tgz(r-4.3-emscripten)
sRNAGenetic.pdf |sRNAGenetic.html✨
sRNAGenetic/json (API)
| # Install 'sRNAGenetic' in R: |
| install.packages('sRNAGenetic', repos = c('https://w123yu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/w123yu/srnagenetic/issues
- F1_miRNA_count - Sequences of miRNAs from one species
- F1_miRNA_rpm - Sequences of miRNAs from one species
- F1_sRNA_seq - Sequences of sRNAs from one species
- P1_miRNA_count - Sequences of miRNAs from one species
- P1_miRNA_rpm - Sequences of miRNAs from one species
- P1_sRNA_seq - Sequences of sRNAs from one species
- P2_miRNA_count - Sequences of miRNAs from one species
- P2_miRNA_rpm - Sequences of miRNAs from one species
- P2_sRNA_seq - Sequences of sRNAs from one species
Last updated 3 years agofrom:69197f2bc4. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 21 2024 |
| R-4.5-win | OK | Nov 21 2024 |
| R-4.5-linux | OK | Nov 21 2024 |
| R-4.4-win | OK | Nov 21 2024 |
| R-4.4-mac | OK | Nov 21 2024 |
| R-4.3-win | OK | Nov 21 2024 |
| R-4.3-mac | OK | Nov 21 2024 |
Exports:basepreplotCountfilitergeneticGet12BinsGetDAtablelenplotmirnapredatamiVennDatamiVennPlotpolyDESeqRpmfilitersrnapredata
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelclicodetoolscolorspacecpp11crayoncurlDelayedArrayDESeq2fansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggscigluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigplyrR6RColorBrewerRcppRcppArmadillorlangS4ArraysS4VectorsscalessnowSparseArraySummarizedExperimentsystibbleUCSC.utilsutf8vctrsVennDiagramviridisLitewithrXVectorzlibbioc
